Difference between revisions of "Burden of disease"
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Burden of disease estimate for responses that can be calculated based on population attributable fraction (PAF). | Burden of disease estimate for responses that can be calculated based on population attributable fraction (PAF). | ||
− | <rcode name="BoDpaf" label="Initiate BoDpaf (for developers only)"> | + | <rcode name="BoDpaf" label="Initiate BoDpaf (for developers only)" embed=1> |
# This is code Op_en7422/BoDpaf on page [[Burden of disease]] | # This is code Op_en7422/BoDpaf on page [[Burden of disease]] | ||
library(OpasnetUtils) | library(OpasnetUtils) | ||
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dependencies = data.frame( | dependencies = data.frame( | ||
Name = c( | Name = c( | ||
− | + | # "population", # No population; BoDt must be the total BoD in the target population | |
"BoDt", # Total burden of disease of the studied responses per a defined time interval | "BoDt", # Total burden of disease of the studied responses per a defined time interval | ||
"RR", # Relative risks for the given exposure | "RR", # Relative risks for the given exposure | ||
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), | ), | ||
Ident = c( | Ident = c( | ||
− | + | # "Op_en2261/population", # [[Health impact assessment]] | |
"Op_en5917/BoDt", # [[Disease risk]] | "Op_en5917/BoDt", # [[Disease risk]] | ||
"Op_en2261/RR", # [[Health impact assessment]] | "Op_en2261/RR", # [[Health impact assessment]] | ||
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formula = function(...) { | formula = function(...) { | ||
AF <- (RR > 1) * (1 - 1/RR) + (RR <= 1) * (RR - 1) # See [[HIA]] for explanation | AF <- (RR > 1) * (1 - 1/RR) + (RR <= 1) * (RR - 1) # See [[HIA]] for explanation | ||
− | out <- BoDt | + | out <- BoDt * AF |
return(sumExposcen(out)) | return(sumExposcen(out)) | ||
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BoDcase calculates burden of disease based on numbers of cases, durations of diseases, and disability weights. | BoDcase calculates burden of disease based on numbers of cases, durations of diseases, and disability weights. | ||
− | <rcode name="BoDcase" label="Initiate BoDcase (for developers only)"> | + | <rcode name="BoDcase" label="Initiate BoDcase (for developers only)" embed=1> |
# This is code Op_en7422/BoDcase on page [[Burden of disease]] | # This is code Op_en7422/BoDcase on page [[Burden of disease]] | ||
library(OpasnetUtils) | library(OpasnetUtils) | ||
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BoD calculates burden of disease as a combination of burdens of disease based on either PAF or cases. If a response estimate comes from both BoDpaf and BoDcase, one is picked by random for each unique combination, and the source of the estimate is given in a non-marginal index BurdenSource. | BoD calculates burden of disease as a combination of burdens of disease based on either PAF or cases. If a response estimate comes from both BoDpaf and BoDcase, one is picked by random for each unique combination, and the source of the estimate is given in a non-marginal index BurdenSource. | ||
− | <rcode name="BoD" label="Initiate BoD (for developers only)"> | + | <rcode name="BoD" label="Initiate BoD (for developers only)" embed=1> |
# This is code Op_en7422/BoD on page [[Burden of disease]] | # This is code Op_en7422/BoD on page [[Burden of disease]] | ||
library(OpasnetUtils) | library(OpasnetUtils) | ||
− | |||
BoD <- Ovariable( | BoD <- Ovariable( | ||
"BoD", # This calculates the total burden of disease. | "BoD", # This calculates the total burden of disease. | ||
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out@output["Source"], | out@output["Source"], | ||
by = out@output[colnames(out@output)[out@marginal]], | by = out@output[colnames(out@output)[out@marginal]], | ||
− | FUN = function(x) | + | FUN = function(x) if("BoDpaf" %in% x) "BoDpaf" else x[1] # If estimate comes from both BoDcase and BoDpaf, prefer BoDpaf. |
) | ) | ||
) | ) |
Revision as of 14:06, 6 September 2017
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Contents
Question
How to estimate the disease burden of important risk factors?
Answer
⇤# : THIS PAGE SHOULD CONTAIN AN OVERVIEW ON HOW TO PERFORM DISEASE BURDEN STUDIES. --Jouni (talk) 16:16, 10 April 2016 (UTC)
Rationale
Global Burden of Disease Study 2010
Instructions
- Download the data from this page as csv
- Change names of columns: Causes of disease or injury -> Response; Measurement -> Unit; Value -> Result. Move Result to the rightmost column.
- Upload the csv to Opasnet Base using OpasnetBaseImport to table "GBD by risk factor" and unit "several". (This is for archiving purposes only: the latter tasks may be easier directly from the csv file.)
- Pick only rows with Unit = DALY per 100000.
- Sum over causes of disease so that you get one value for each risk factor.
- Go to Wikidata and suggest that "disease burden" is taken as a new property. When the property is available,
- go to each Item of the risk factor and add property disease burden to that item. Include qualifiers Global, Both sexes, Year 2013, all ages, all causes. (Find out what properties are available)
- Make references to the link above, the IHME institute, this article, and secondarily to this Opasnet page. Remember to put date of entry.
Show details |
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Causes of death, disease, and injury
Politically interesting causes of death and disease
Important due to public health relevance
--# : The rest were already in the list above, so there's no point digging out the links twice --Heta (talk) 10:50, 4 February 2016 (UTC) |
Calculations
These ovariables are used to calculate burden of disease based either on relative or absolute risks, and counted as DALYs. For ovariables that calculate numbers of cases, see Health impact assessment.
Burden of disease estimate for responses that can be calculated based on population attributable fraction (PAF).
BoDcase calculates burden of disease based on numbers of cases, durations of diseases, and disability weights.
BoD calculates burden of disease as a combination of burdens of disease based on either PAF or cases. If a response estimate comes from both BoDpaf and BoDcase, one is picked by random for each unique combination, and the source of the estimate is given in a non-marginal index BurdenSource.
See also
- IHME Institute visualization tool
- WHO estimates of disease burden for 2000-2012
- Wikidata property: disease burden
- Disease burden (a method for estimating disease burden in Wikidata) related page in Wikipedia
Keywords
References
- ↑ Reference to the Lim Lancet article