Difference between revisions of "Disease risk"

Revision as of 07:09, 21 August 2014

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Question

What are incidence or prevalence rates of different diseases in Finland?

Answer

+ Show code - Hide code


library(OpasnetUtils) # A package with Opasnet functionalities
library(xtable)       # A package with table formats
library(ggplot2)      # A package with fancy graph formats

objects.latest("Op_en5917", "initiate") # Get the latest ovariables from code calculations on page Op_en5917.


diseaseRisk <- EvalOutput(diseaseRisk)

oprint(summary(diseaseRisk))

ggplot(diseaseRisk@output, # Show a bar chart
	aes(x = Disease, y = diseaseRiskResult, fill = Response.metric)) +
	geom_bar(position="dodge") + 
	theme_grey(base_size = 24) +
	theme(axis.text.x = element_text(angle = 90, hjust = 1)) +
	scale_y_log10() # limits = c(1, 1000000))

--# : Code seems to work, but gives out the yellow errorbox. --Heta 13:02, 27 August 2013 (EEST)

Rationale

Calculations

+ Show code - Hide code

library(OpasnetUtils)
library(xtable)

diseaseRisk <- Ovariable("diseaseRisk", ddata = "Op_en5917", getddata = FALSE, save = TRUE)

cat("Ovariable diseaseRisk saved. page_indent = Op_en5917, code_name = initiate\n")

print(xtable(EvalOutput(diseaseRisk, N = 1)@output), type = 'html')

Data

Data from op_fi:Seturi/tautiriski

Population column defines the relevant population subgroup other than age and sex subgroups, which are defined in their respective columns.

Difference between revisions of "Disease risk"(# /a)
Obs	Trait	Population	Age	Sex	Response.metric	Unit	Result	Description
1	Lung cancer	Whole population			Morbidity	cases /a	2276	Year 2010 cancer register
2	Cardiopulmonary	Whole population			Mortality	cases /a	23840
3	Total mortality	Whole population			Mortality	cases /a	50 568	2011 data, Tilastokeskus
4	Bladder cancer	Whole population			Morbidity	cases /a	898	Year 2010 cancer register
5	Myocardial infarction	Whole population			Morbidity	cases /a	24898
6	Ischaemic heart disease	Whole population			Mortality	cases /a	11887
7	CHD	Whole population			Mortality	cases /a	11887	This is a duplicate of the previous row to match more ERFs
8	Asthma	Whole population			Morbidity	cases /a	14561
9	Asthma	Whole population	>21		Morbidity	cases /a	9466
10	Asthma	Whole population	<14		Morbidity	cases /a	4366
11	Pulmonary infections	Whole population	<2		Morbidity	DALY	35
12	Otitis media	Whole population	<3		Morbidity	DALY	48
13	Lower respiratory symptoms	Whole population			Morbidity	cases /a	483000
14	Upper respiratory symptoms	Whole population			Morbidity	cases /a	928846
15	Ischaemic heart disease/myocardial infarction	Whole population	35-64	M	Morbidity	cases /a	4655	35-64v miesten 1. infarktin insidenssi 354/100000 1991-4. Aromaa ym Suomalaisten terveys s155
16	CHD	Whole population	35-64	M	Morbidity	cases /a	4655	35-64v miesten 1. infarktin insidenssi 354/100000 1991-4. Aromaa ym Suomalaisten terveys s155. This is a duplicate of the previous row to match more ERFs
17	Nasal cancer	Whole population	20-64		Morbidity	cases /a	35	Age boundaries are assumed without original data
18	COPD	Whole population	15-64		Mortality	cases /a	1127
19	Asthma	Whole population	15-64	M	Morbidity	cases /a	3120
20	Asthma	Whole population	15-64	F	Morbidity	cases /a	4244
21	Cancer	Whole population			Morbidity	cases /a	10880
22	All skin cancers and basalioma	Whole population			Morbidity	cases /a	8777
23	Skin cancer	Whole population			Morbidity	cases /a	2005
24	Melanoma	Whole population			Morbidity	cases /a	906
25	Carcinoma spinocellulare	Whole population			Morbidity	cases /a	1099
26	Basalioma	Whole population			Morbidity	cases /a	6772
27	Leukemia	Whole population			Morbidity	cases /a	539	Year 2010, cancer register

Keywords

References

Related files

@@ Line 53: / Line 53: @@
 Data from [[:op_fi:Seturi/tautiriski]]
-<t2b index="Disease,Population,Age,Sex,Response.metric,Unit" obs="Result" desc="Description" unit="# /a">
+Population column defines the relevant population subgroup '''other than''' age and sex subgroups, which are defined in their respective columns.
+<t2b index="Trait,Population,Age,Sex,Response.metric,Unit" obs="Result" desc="Description" unit="# /a">
 Lung cancer|Whole population|||Morbidity|cases /a|2276|Year 2010 cancer register
 Cardiopulmonary|Whole population|||Mortality|cases /a|23840|
@@ Line 60: / Line 62: @@
 Myocardial infarction|Whole population|||Morbidity|cases /a|24898|
 Ischaemic heart disease|Whole population|||Mortality|cases /a|11887|
+CHD|Whole population|||Mortality|cases /a|11887|This is a duplicate of the previous row to match more ERFs
 Asthma|Whole population|||Morbidity|cases /a|14561|
 Asthma|Whole population|>21||Morbidity|cases /a|9466|
@@ Line 67: / Line 70: @@
 Lower respiratory symptoms|Whole population|||Morbidity|cases /a|483000|
 Upper respiratory symptoms|Whole population|||Morbidity|cases /a|928846|
-Ischaemic heart disease/myocardial infarction|Population at working age||M|Morbidity|cases /a|4655|35-64v miesten 1. infarktin insidenssi 354/100000 1991-4. Aromaa ym Suomalaisten terveys s155
+Ischaemic heart disease/myocardial infarction|Whole population|35-64|M|Morbidity|cases /a|4655|35-64v miesten 1. infarktin insidenssi 354/100000 1991-4. Aromaa ym Suomalaisten terveys s155
-Nasal cancer|Population at working age|||Morbidity|cases /a|35|
+CHD|Whole population|35-64|M|Morbidity|cases /a|4655|35-64v miesten 1. infarktin insidenssi 354/100000 1991-4. Aromaa ym Suomalaisten terveys s155. This is a duplicate of the previous row to match more ERFs
+Nasal cancer|Whole population|20-64||Morbidity|cases /a|35|Age boundaries are assumed without original data
 COPD|Whole population|15-64||Mortality|cases /a|1127|
-Asthma|Population at working age|15-64|M|Morbidity|cases /a|3120|
+Asthma|Whole population|15-64|M|Morbidity|cases /a|3120|
-Asthma|Population at working age|15-64|F|Morbidity|cases /a|4244|
+Asthma|Whole population|15-64|F|Morbidity|cases /a|4244|
 Cancer|Whole population|||Morbidity|cases /a|10880|
 All skin cancers and basalioma|Whole population|||Morbidity|cases /a|8777|

Difference between revisions of "Disease risk"

Revision as of 07:09, 21 August 2014

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